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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54675090_54675869_F

Intron Information:

Intron Rank:
145083
Intron Class:
major
Intron Phase:
Intron Coordinates:
54675090 - 54675869
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TATATCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
57.6
41.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
36.7
-1.5
3.1
46.9
48.4
Minor BPS
48.8
-0
1.9
70.59
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028249
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037622
54662573 - 54676505
13933
ENSAPLT00000032866
54662573 - 54676505
13933