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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54682535_54690302_F

Intron Information:

Intron Rank:
131791
Intron Class:
major
Intron Phase:
Intron Coordinates:
54682535 - 54690302
Intron Length:
7768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATGTGTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.1
0.88
0.6
84.6
23.2
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
50.6
0.1
2.2
73.52
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020744
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018489
54682427 - 54690508
8082