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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54691982_54729003_F

Intron Information:

Intron Rank:
143947
Intron Class:
major
Intron Phase:
Intron Coordinates:
54691982 - 54729003
Intron Length:
37022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTTACTATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
59.2
0.28
1.7
74.66
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027585
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039371
54691741 - 54732136
40396
ENSAPLT00000034583
54691741 - 54734838
43098
ENSAPLT00000017886
54691741 - 54751827
60087