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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54729173_54730952_F

Intron Information:

Intron Rank:
143953
Intron Class:
major
Intron Phase:
Intron Coordinates:
54729173 - 54730952
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCATA
5'SS Class:
major
3'SS Sequence:
GGTTATTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
75.8
35.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.7
0.67
0.9
72.4
42.2
Minor 5ss
43.6
-0.7
2.8
56.7
47.6
Minor BPS
59.9
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027585
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039371
54691741 - 54732136
40396