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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54729173_54734433_F

Intron Information:

Intron Rank:
143951
Intron Class:
major
Intron Phase:
Intron Coordinates:
54729173 - 54734433
Intron Length:
5261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCATA
5'SS Class:
major
3'SS Sequence:
CTGTTTCTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAAACCGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
75.8
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.2
0.34
1.2
71.6
38.6
Minor 5ss
43.6
-0.7
2.8
56.7
47.6
Minor BPS
48.5
-0.1
2.1
59.29
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027585
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034583
54691741 - 54734838
43098