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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54738975_54762443_F

Intron Information:

Intron Rank:
143955
Intron Class:
major
Intron Phase:
Intron Coordinates:
54738975 - 54762443
Intron Length:
23469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.7
0.65
1
74.5
38.9
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
73.2
0.73
1.5
81.71
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027585
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040723
54728830 - 54762490
33661