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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54772573_54773896_F

Intron Information:

Intron Rank:
143763
Intron Class:
major
Intron Phase:
Intron Coordinates:
54772573 - 54773896
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCTATTCATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
43.7
-0.4
2.1
64.57
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027466
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048018
54772334 - 54786053
13720