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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54783004_54785670_F

Intron Information:

Intron Rank:
143752
Intron Class:
major
Intron Phase:
Intron Coordinates:
54783004 - 54785670
Intron Length:
2667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCATTCTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
84.6
33.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.3
0.66
0.8
77.5
31
Minor 5ss
34.8
-1.7
3.1
49.5
46.3
Minor BPS
68.8
0.67
1.6
80
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027466
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019551
54782513 - 54792250
9738
ENSAPLT00000048018
54772334 - 54786053
13720
ENSAPLT00000032386
54782513 - 54788519
6007
ENSAPLT00000025250
54782513 - 54792186
9674