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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54786126_54788124_F

Intron Information:

Intron Rank:
143753
Intron Class:
major
Intron Phase:
Intron Coordinates:
54786126 - 54788124
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTCCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
79.8
0.67
0.9
70.6
44.1
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
60.7
0.41
1.9
82.89
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027466
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032386
54782513 - 54788519
6007
ENSAPLT00000025250
54782513 - 54792186
9674
ENSAPLT00000019551
54782513 - 54792250
9738