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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54826722_54836278_F

Intron Information:

Intron Rank:
131251
Intron Class:
major
Intron Phase:
Intron Coordinates:
54826722 - 54836278
Intron Length:
9557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCCTATCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.5
0.57
1
72.5
37.6
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
46.4
-0.2
1.7
55.34
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020513
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037541
54826456 - 54871879
45424