Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54832583_54836278_F

Intron Information:

Intron Rank:

131256

Intron Class:

major

Intron Phase:

Intron Coordinates:

54832583 - 54836278

Intron Length:

3696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

ATCCTATCAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.6

22.3

Major BPS

88.7

0.96

0.8

36.5

Major PPT

75.5

0.57

72.5

37.6

Minor 5ss

30.6

-2.2

2.6

35.8

41.1

Minor BPS

46.4

-0.2

1.7

55.34

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046620

54832272 - 54854845

22574