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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54836351_54871792_F

Intron Information:

Intron Rank:
131252
Intron Class:
major
Intron Phase:
Intron Coordinates:
54836351 - 54871792
Intron Length:
35442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTAT
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAACATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
76.1
35.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.8
0.58
0.8
68.4
37.4
Minor 5ss
36.8
-1.5
3.1
49.5
46.8
Minor BPS
49.5
-0.1
1.5
50.61
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020513
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037541
54826456 - 54871879
45424