Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54890897_54891640_F

Intron Information:

Intron Rank:

145296

Intron Class:

major

Intron Phase:

Intron Coordinates:

54890897 - 54891640

Intron Length:

744

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGAAA

5'SS Class:

major

3'SS Sequence:

TCTTCTGCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

ATCTTTGTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

68.4

38.1

Major BPS

84.4

0.85

1.1

34.5

Major PPT

83.1

0.74

0.8

80.8

31.2

Minor 5ss

29.9

-2.3

3.3

39.1

46.3

Minor BPS

48.7

-0.2

56.14

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045942

54890551 - 54900589

10039

ENSAPLT00000019053

54890551 - 54965404

74854