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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54891779_54900466_F

Intron Information:

Intron Rank:
145313
Intron Class:
major
Intron Phase:
Intron Coordinates:
54891779 - 54900466
Intron Length:
8688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCACTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CATTTCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
67.5
0.39
1
60.5
40.1
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
53.1
0.18
1.9
73.44
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028336
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045942
54890551 - 54900589
10039