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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54891779_54965031_F

Intron Information:

Intron Rank:
145297
Intron Class:
major
Intron Phase:
Intron Coordinates:
54891779 - 54965031
Intron Length:
73253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
CCTCTCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
70.8
0.47
1
74.9
33.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
55.5
0.17
1.7
63.68
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028336
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019053
54890551 - 54965404
74854