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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54976301_54982060_F

Intron Information:

Intron Rank:
145303
Intron Class:
major
Intron Phase:
Intron Coordinates:
54976301 - 54982060
Intron Length:
5760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGATACATATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
44.9
-0.3
2.1
65.66
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028336
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043991
54891683 - 54982406
90724
ENSAPLT00000027638
54976077 - 55008789
32713