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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54976301_55004035_F

Intron Information:

Intron Rank:
145300
Intron Class:
major
Intron Phase:
Intron Coordinates:
54976301 - 55004035
Intron Length:
27735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTTCACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
53.5
0.19
1.8
74.48
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028336
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025589
54976077 - 55008782
32706