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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54986429_55004035_F

Intron Information:

Intron Rank:
145305
Intron Class:
major
Intron Phase:
Intron Coordinates:
54986429 - 55004035
Intron Length:
17607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTTCACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
53.5
0.19
1.8
74.48
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028336
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027638
54976077 - 55008789
32713