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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55092322_55109796_R

Intron Information:

Intron Rank:
142966
Intron Class:
major
Intron Phase:
Intron Coordinates:
55092322 - 55109796
Intron Length:
17475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
80
0.75
1
78.6
31
Major PPT
69.7
0.44
0.9
64.5
36.8
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
65.6
0.57
1.9
89.17
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024267
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018537
55091613 - 55110046
18434