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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5513449_5518476_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5513449 - 5518476
Intron Length:
5028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTCTTCGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TGCACCTTGAAT
Flanking Amino Acid:
AEGGAPRCHNGPVQSPMQFP
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
80.8
0.69
0.8
72.4
37.8
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
62
0.46
1.5
74.18
42.3

Associated Gene:

Gene:
SEC24B
Ensembl Gene ID:
ENSAPLG00000009250
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036095
5513334 - 5556179
42846
ENSAPLT00000018227
5513334 - 5556179
42846
ENSAPLT00000009721
5513334 - 5556179
42846