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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55208105_55229219_R

Intron Information:

Intron Rank:
138777
Intron Class:
major
Intron Phase:
Intron Coordinates:
55208105 - 55229219
Intron Length:
21115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TGCTATCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTACCATACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.5
0.69
0.9
77.1
36.8
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
49.6
-0
2
69.75
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022173
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025604
55207896 - 55229596
21701