Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55215055_55283237_R

Intron Information:

Intron Rank:

144661

Intron Class:

major

Intron Phase:

Intron Coordinates:

55215055 - 55283237

Intron Length:

68183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGAA

5'SS Class:

strong_major

3'SS Sequence:

GCCATTTTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

TCTTCCTTATAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

73.7

30.1

Major BPS

79.4

0.73

80.1

Major PPT

68.2

0.41

1.1

63.6

41.7

Minor 5ss

29.1

-2.4

3.4

37.8

Minor BPS

66.8

0.51

1.7

75.58

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035228

55214347 - 55301805

87459