About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55229655_55239264_R

Intron Information:

Intron Rank:
138781
Intron Class:
major
Intron Phase:
Intron Coordinates:
55229655 - 55239264
Intron Length:
9610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.2
0.72
0.8
76.6
36.5
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
55.5
0.17
2
72.91
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022173
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039570
55228321 - 55242274
13954