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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55240327_55241400_F

Intron Information:

Intron Rank:
146026
Intron Class:
major
Intron Phase:
Intron Coordinates:
55240327 - 55241400
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
AGAAAAGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
73.3
0.52
1.1
78.8
33.5
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
40.7
-0.7
2.2
51.09
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028688
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020763
55240296 - 55244447
4152