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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55241516_55244084_F

Intron Information:

Intron Rank:
146027
Intron Class:
major
Intron Phase:
Intron Coordinates:
55241516 - 55244084
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGGG
5'SS Class:
major
3'SS Sequence:
GGTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GGTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
60.8
44.4
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
82.6
0.73
0.9
76
38
Minor 5ss
35.4
-1.7
3.4
47.6
47.9
Minor BPS
65.9
0.49
1.6
72.95
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028688
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020763
55240296 - 55244447
4152