Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55241675_55241796_R

Intron Information:

Intron Rank:

138776

Intron Class:

major

Intron Phase:

Intron Coordinates:

55241675 - 55241796

Intron Length:

122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTTGC

5'SS Class:

major

3'SS Sequence:

GATGTTTCTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

GGGTCCTGAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

63.3

38.1

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

72.5

0.51

0.9

66.5

40.3

Minor 5ss

37.3

-1.4

2.9

49.2

41.2

Minor BPS

57.6

0.24

1.6

63.76

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022173

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024511

55228321 - 55242274

13954