Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5525872_5534755_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5525872 - 5534755

Intron Length:

8884

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTAAAA

5'SS Class:

major

3'SS Sequence:

TTTCCCTCTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

AGTCACCTAACT

Flanking Amino Acid:

TQPPESALQEAIDSSSTTSS

Intron Amino Acid Position:

336

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

69.9

35.9

Major BPS

75.1

0.62

65.6

Major PPT

81.5

0.71

0.7

74.2

Minor 5ss

31.8

-2.1

3.1

40.4

45.3

Minor BPS

54.5

0.22

1.9

75.35

40.1

Associated Gene:

Gene:

SEC24B

Ensembl Gene ID:

ENSAPLG00000009250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018227

5513334 - 5556179

42846