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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55283442_55301591_R

Intron Information:

Intron Rank:
144655
Intron Class:
major
Intron Phase:
Intron Coordinates:
55283442 - 55301591
Intron Length:
18150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGATAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTCTCTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66.2
0.37
1
63
41.8
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
66.5
0.51
1.2
70.93
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025181
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020728
55275674 - 55302994
27321
ENSAPLT00000035228
55214347 - 55301805
87459
ENSAPLT00000021878
55271294 - 55302994
31701