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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55335995_55345327_R

Intron Information:

Intron Rank:
152800
Intron Class:
major
Intron Phase:
Intron Coordinates:
55335995 - 55345327
Intron Length:
9333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCACTT
5'SS Class:
major
3'SS Sequence:
TTTTAACCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
68.1
42.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.3
0.52
1
67.8
37.7
Minor 5ss
49.5
-0
2.9
74.2
42
Minor BPS
71.4
0.65
1.2
75.03
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046475
55335566 - 55346153
10588
ENSAPLT00000045936
55332251 - 55354272
22022