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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55345424_55345852_R

Intron Information:

Intron Rank:
152804
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
55345424 - 55345852
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTCTG
5'SS Class:
weak_major
3'SS Sequence:
TGTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCCATTTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.4
56.6
47.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
85.7
0.8
0.8
77.4
36.9
Minor 5ss
45.8
-0.4
2.8
63
41.7
Minor BPS
46.7
-0.1
1.7
60.2
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046475
55335566 - 55346153
10588