About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5537507_5539029_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5537507 - 5539029
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCATATT
5'SS Class:
major
3'SS Sequence:
GCTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGATTT
Flanking Amino Acid:
HHPGFQHYPQQYPGVNQLSS
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
76.5
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.7
0.89
0.7
87.9
29.4
Minor 5ss
36.3
-1.6
3.1
52
44.5
Minor BPS
48.2
-0
1.9
71
39.9

Associated Gene:

Gene:
SEC24B
Ensembl Gene ID:
ENSAPLG00000009250
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036095
5513334 - 5556179
42846
ENSAPLT00000018227
5513334 - 5556179
42846
ENSAPLT00000009721
5513334 - 5556179
42846