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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55385430_55387075_R

Intron Information:

Intron Rank:
140668
Intron Class:
major
Intron Phase:
Intron Coordinates:
55385430 - 55387075
Intron Length:
1646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTATCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
0.9
77.7
31.1
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
55.5
0.15
1.8
70.46
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023036
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020004
55367465 - 55387131
19667