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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5542174_5543152_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5542174 - 5543152
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTTTACTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
VEFIASSDYMLRPPQPAVYL
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.9
0.81
0.7
81.6
29.9
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
SEC24B
Ensembl Gene ID:
ENSAPLG00000009250
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036095
5513334 - 5556179
42846
ENSAPLT00000018227
5513334 - 5556179
42846
ENSAPLT00000009721
5513334 - 5556179
42846