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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5543266_5544374_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5543266 - 5544374
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTAATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTCTAATG
Flanking Amino Acid:
LCNSLLENLDKLPGDSRTRI
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
80.6
27.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.7
0.6
1
72.9
41.8
Minor 5ss
43.2
-0.7
3.1
56.6
42
Minor BPS
51.8
-0
1.8
62.82
40.1

Associated Gene:

Gene:
SEC24B
Ensembl Gene ID:
ENSAPLG00000009250
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036095
5513334 - 5556179
42846
ENSAPLT00000018227
5513334 - 5556179
42846
ENSAPLT00000009721
5513334 - 5556179
42846