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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55437814_55456126_R

Intron Information:

Intron Rank:
142709
Intron Class:
major
Intron Phase:
Intron Coordinates:
55437814 - 55456126
Intron Length:
18313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTAAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.8
0.51
0.9
63.8
41.5
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
64.6
0.54
1.6
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024055
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020890
55430763 - 55459105
28343