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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5546141_5546768_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5546141 - 5546768
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
SSQYSDLASLACMSKYSAGC
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
34.1
-1.8
3.3
45.5
44.6
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
SEC24B
Ensembl Gene ID:
ENSAPLG00000009250
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036095
5513334 - 5556179
42846
ENSAPLT00000018227
5513334 - 5556179
42846
ENSAPLT00000009721
5513334 - 5556179
42846