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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5550997_5551851_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5550997 - 5551851
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTACAG
Flanking Amino Acid:
LYRIDKLTEESTIHVNDRVV
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89.6
0.89
0.7
84
31
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
63.6
0.29
1.8
72.3
40.7

Associated Gene:

Gene:
SEC24B
Ensembl Gene ID:
ENSAPLG00000009250
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036095
5513334 - 5556179
42846
ENSAPLT00000018227
5513334 - 5556179
42846
ENSAPLT00000009721
5513334 - 5556179
42846