Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5553114_5554760_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5553114 - 5554760

Intron Length:

1647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGCGTT

5'SS Class:

major

3'SS Sequence:

TACCTTCAACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTACCT

Flanking Amino Acid:

PNYASVPQKMTQLPEVVALS

Intron Amino Acid Position:

1160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.1

68.8

42.2

Major BPS

100

1.24

0.5

100

Major PPT

62.1

0.27

56.2

38.8

Minor 5ss

-1

3.7

60.4

46.7

Minor BPS

71.9

0.77

1.9

93.33

34.8

Associated Gene:

Gene:

SEC24B

Ensembl Gene ID:

ENSAPLG00000009250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018227

5513334 - 5556179

42846

ENSAPLT00000009721

5513334 - 5556179

42846

ENSAPLT00000036095

5513334 - 5556179

42846