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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55551151_55552664_R

Intron Information:

Intron Rank:
147470
Intron Class:
major
Intron Phase:
Intron Coordinates:
55551151 - 55552664
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GTTTTTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
76.3
0.59
1
78.1
34.2
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
53.3
-0
1.7
61.27
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048148
55525778 - 55557384
31607