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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55552747_55557343_R

Intron Information:

Intron Rank:
147471
Intron Class:
major
Intron Phase:
Intron Coordinates:
55552747 - 55557343
Intron Length:
4597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATATATTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.2
0.48
0.9
65.7
39.9
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
49.1
-0
1.9
63.28
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026671
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048148
55525778 - 55557384
31607