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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55662880_55683716_R

Intron Information:

Intron Rank:
152462
Intron Class:
major
Intron Phase:
Intron Coordinates:
55662880 - 55683716
Intron Length:
20837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCAGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
GTCTTCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
83.8
0.76
0.8
81.7
28.6
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
49.5
-0
1.9
64.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029608
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038498
55662694 - 55686153
23460