Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55818757_55827220_R

Intron Information:

Intron Rank:

151003

Intron Class:

major

Intron Phase:

Intron Coordinates:

55818757 - 55827220

Intron Length:

8464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TATATTTTCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TAATTTTTATAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.6

31.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.4

0.62

0.8

72.8

37.1

Minor 5ss

35.5

-1.6

3.3

47.5

42.3

Minor BPS

54.3

0.21

1.6

70.82

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034333

55745117 - 55827376

82260