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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55836435_55840729_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55836435 - 55840729
Intron Length:
4295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCACTCTTATCT
Flanking Amino Acid:
LFLTDGRIPAAMRLCTEECR
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
60.2
0.4
1.6
73.82
42.9

Associated Gene:

Gene:
PCDH18
Ensembl Gene ID:
ENSAPLG00000014396
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020234
55835503 - 55936495
100993
ENSAPLT00000015001
55835503 - 56064711
229209
ENSAPLT00000030118
55835503 - 56036192
200690