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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5583877_5587229_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5583877 - 5587229
Intron Length:
3353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTCC
5'SS Class:
weak_major
3'SS Sequence:
CTTTCATCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TACTCTTTCATC
Flanking Amino Acid:
GIVKAEVFTTDGSKVSDATL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
68.5
37.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79
0.65
0.8
73.7
30.1
Minor 5ss
60.9
0.37
1.9
71.4
38.7
Minor BPS
58.5
0.25
1.7
66.7
39.8

Associated Gene:

Gene:
MCUB
Ensembl Gene ID:
ENSAPLG00000010215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010664
5563889 - 5590935
27047