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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55840894_55841018_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55840894 - 55841018
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTCCACAATC
Flanking Amino Acid:
FRGNKYSRSYRYALQDMDKF
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
86.5
0.82
0.7
80.5
30.9
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
59.5
0.28
1.8
73.32
37.2

Associated Gene:

Gene:
PCDH18
Ensembl Gene ID:
ENSAPLG00000014396
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020234
55835503 - 55936495
100993
ENSAPLT00000015001
55835503 - 56064711
229209
ENSAPLT00000030118
55835503 - 56036192
200690