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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55841105_55842036_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55841105 - 55842036
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTTAGCA
Flanking Amino Acid:
ELTHATPAVEVSQLLSMLHQ
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.7
0.85
0.8
85.6
27.3
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
78.1
0.88
1.4
87.27
31

Associated Gene:

Gene:
PCDH18
Ensembl Gene ID:
ENSAPLG00000014396
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020234
55835503 - 55936495
100993
ENSAPLT00000015001
55835503 - 56064711
229209
ENSAPLT00000030118
55835503 - 56036192
200690