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Intron Name: Anas_platyrhynchos_platyrhynchos_4_55844161_55890490_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55844161 - 55890490

Intron Length:

46330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

TGAACATCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

GCCCACTGAACA

Flanking Amino Acid:

KTGGRRNAGVLFHVEVEVLD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.6

1.1

69.3

36.6

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

67.3

0.39

59.2

41.6

Minor 5ss

36.5

-1.5

3.2

39.8

Minor BPS

48.8

-0

1.7

55.78

42.5

Associated Gene:

Gene:

PCDH18

Ensembl Gene ID:

ENSAPLG00000014396

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030118

55835503 - 56036192

200690

ENSAPLT00000015001

55835503 - 56064711

229209