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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5587335_5587541_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5587335 - 5587541
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATATGACA
Flanking Amino Acid:
TAYSVSPPVKDKLSSEHATE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.7
0.71
0.8
78.3
29.8
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
50.3
0
1.8
70.13
35.3

Associated Gene:

Gene:
MCUB
Ensembl Gene ID:
ENSAPLG00000010215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010664
5563889 - 5590935
27047