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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55890576_56035665_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55890576 - 56035665
Intron Length:
145090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGACAA
5'SS Class:
major
3'SS Sequence:
CTCTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTGTATATAAAG
Flanking Amino Acid:
MDREGFCCARIFCGLKFAK
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.1
41.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
80.9
0.7
0.8
76.5
31.8
Minor 5ss
30.4
-2.2
3.3
39.1
46.2
Minor BPS
47.9
-0.3
1.9
58.61
42.8

Associated Gene:

Gene:
PCDH18
Ensembl Gene ID:
ENSAPLG00000014396
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030118
55835503 - 56036192
200690