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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_55890576_56059344_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55890576 - 56059344
Intron Length:
168769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
CTCTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTGTATATAAAG
Flanking Amino Acid:
GMDFTSTASRRIFCGLKFAK
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
80.9
0.7
0.8
76.5
31.8
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
47.9
-0.3
1.9
58.61
42.8

Associated Gene:

Gene:
PCDH18
Ensembl Gene ID:
ENSAPLG00000014396
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015001
55835503 - 56064711
229209